Sfoglia per Autore
Covid-19 Pandemic’s Enduring Impact on Urban Mobility: The Case of Free-Floating Bike Sharing in Padova, Italy
2024 Cavattoni, Margherita; Comin, Matteo; Silvestri, Francesco
Efficient Hashing of Multiple Spaced Seeds with Application
2023 Mian, Eleonora; Petrucci, Enrico; Pizzi, Cinzia; Comin, Matteo
USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs
2023 Rossignolo, Enrico; Comin, Matteo
ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs
2023 Cavattoni, Margherita; Comin, Matteo
Efficient k-mer Indexing with Application to Mapping-free SNP Genotyping
2022 Marcolin, M; Andreace, F; Comin, M
SPRISS: Approximating Frequent K-mers by Sampling Reads, and Applications
2022 Santoro, Diego; Pellegrina, Leonardo; Comin, Matteo; Vandin, Fabio
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers
2021 Andreace, F.; Pizzi, C.; Comin, M.
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics
2021 Andreace, Francesco; Pizzi, Cinzia; Comin, Matteo
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21)
2021 Allmer, Jens; Elloumi, Mourad; Comin, Matteo; Hofestädt, Ralf
Comparison of microbiome samples: methods and computational challenges
2021 Comin, Matteo; DI CAMILLO, Barbara; Pizzi, Cinzia; Vandin, Fabio
K2Mem: Discovering Discriminative K-mers from Sequencing Data for Metagenomic Reads Classification
2021 Storato, D.; Comin, M.
Fast alignment of reads to a variation graph with application to SNP detection
2021 Monsu, Maurilio; Comin, Matteo
Boosting Metagenomic Classification with Reads Overlap Graphs
2021 Cavattoni, M.; Comin, M.
Iterative Spaced Seed Hashing: Closing the Gap between Spaced Seed Hashing and k-mer Hashing
2020 Petrucci, E.; Noe, L.; Pizzi, C.; Comin, M.
Improving Metagenomic Classification Using Discriminative k-mers from Sequencing Data
2020 Storato, D.; Comin, M.
Indexing k-mers in linear-space for quality value compression
2019 Shibuya, Yoshihiro; Comin, M.
Benchmarking of alignment-free sequence comparison methods
2019 Zielezinski, Andrzej; Girgis, Hani Z; Bernard, Guillaume; Leimeister, Chris-Andre; Tang, Kujin; Dencker, Thomas; Lau, Anna Katharina; Röhling, Sophie; Choi, Jae Jin; Waterman, Michael S; Comin, Matteo; Kim, Sung-Hou; Vinga, Susana; Almeida, Jonas S; Chan, Cheong Xin; James, Benjamin T; Sun, Fengzhu; Morgenstern, Burkhard; Karlowski, Wojciech M
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage
2019 Qian, Jia; Comin, Matteo
Indexing k-mers in linear space for quality value compression
2019 Shibuya, Y.; Comin, M.
Better quality score compression through sequence-based quality smoothing
2019 Shibuya, Yoshihiro; Comin, Matteo
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