Sfoglia per Autore
mbkmeans: Fast clustering for single cell data using mini-batch k-means
2021 Hicks, Stephanie C; Liu, Ruoxi; Ni, Yuwei; Purdom, Elizabeth; Risso, Davide
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
2020 Brann, David H.; Tsukahara, Tatsuya; Weinreb, Caleb; Lipovsek, Marcela; Van den Berge, Koen; Gong, Boying; Chance, Rebecca; Macaulay, Iain C.; Chou, Hsin-Jung; Fletcher, Russell B.; Das, Diya; Street, Kelly; de Bezieux, Hector Roux; Choi, Yoon-Gi; Risso, Davide; Dudoit, Sandrine; Purdom, Elizabeth; Mill, Jonathan; Hachem, Ralph Abi; Matsunami, Hiroaki; Logan, Darren W.; Goldstein, Bradley J.; Grubb, Matthew S.; Ngai, John; Datta, Sandeep Robert
Editorial: Multi-omic Data Integration in Oncology
2020 Finotello, Francesca; Calura, Enrica; Risso, Davide; Hautaniemi, Sampsa; Romualdi, Chiara
Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition
2020 Xue, Jenny Y; Zhao, Yulei; Aronowitz, Jordan; Mai, Trang T; Vides, Alberto; Qeriqi, Besnik; Kim, Dongsung; Li, Chuanchuan; de Stanchina, Elisa; Mazutis, Linas; Risso, Davide; Lito, Piro
Orchestrating single-cell analysis with Bioconductor
2020 Amezquita, Robert A.; Lun, Aaron T. L.; Becht, Etienne; Carey, Vince J.; Carpp, Lindsay N.; Geistlinger, Ludwig; Martini, Federico; Rue-Albrecht, Kevin; Risso, Davide; Soneson, Charlotte; Waldron, Levi; Pagès, Hervé; Smith, Mike L.; Huber, Wolfgang; Morgan, Martin; Gottardo, Raphael; Hicks, Stephanie C.
Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data
2020 Calgaro, Matteo; Romualdi, Chiara; Waldron, Levi; Risso, Davide; Vitulo, Nicola
Advantages of Modeling Zero-Inflation in scRNA-Seq Data
2019 Risso, Davide
Shank3 modulates sleep and expression of circadian transcription factors
2019 Ingiosi, A. M.; Schoch, H.; Wintler, T.; Singletary, K. G.; Roser, L. G.; Medina, E.; Risso, D.; Frank, M. G.; Peixoto, L.; Righelli, D.
Single-cell transcriptomic profiling of non-small cell lung cancer uncovers inter- and intracell population structure across TCGA lung adenocarcinoma and lung squamous cancer subtypes
2019 Gyan, Kofi E.; Deshpande, Aditya; Beg, Shaham; Tian, Huasong; Rosiene, Joel; Stoeckius, Marlon; Smibert, Peter; Risso, Davide; Mosquera, Juan Miguel; Imielinski, Marcin
Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia
2019 Gaiti, F.; Chaligne, R.; Gu, H.; Brand, R. M.; Kothen-Hill, S.; Schulman, R. C.; Grigorev, K.; Risso, D.; Kim, K. -T.; Pastore, A.; Huang, K. Y.; Alonso, A.; Sheridan, C.; Omans, N. D.; Biederstedt, E.; Clement, K.; Wang, L.; Felsenfeld, J. A.; Bhavsar, E. B.; Aryee, M. J.; Allan, J. N.; Furman, R.; Gnirke, A.; Wu, C. J.; Meissner, A.; Landau, D. A.
Complementary networks of cortical somatostatin interneurons enforce layer specific control
2019 Naka, Alexander; Veit, Julia; Shababo, Ben; Chance, Rebecca K.; Risso, Davide; Stafford, David; Snyder, Benjamin; Egladyous, Andrew; Chu, Desiree; Sridharan, Savitha; Mossing, Daniel P.; Paninski, Liam; Ngai, John; Adesnik, Hillel
Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq
2019 Cole, M. B.; Risso, D.; Wagner, A.; Detomaso, D.; Ngai, J.; Purdom, E.; Dudoit, S.; Yosef, N.
DEScan2
2018 Righelli, Dario; Koberstein, John; Gomes, Bruce; Zhang, Nancy; Angelini, Claudia; Peixoto, Lucia; Risso, Davide
Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability
2018 Kramer, Daniel J; Risso, Davide; Kosillo, Polina; Ngai, John; Bateup, Helen S
Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics
2018 Street, Kelly; Risso, Davide; Fletcher, Russell B; Das, Diya; Ngai, John; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine
Multimodal Single-Cell Profiling Defines the Epigenetic Determinants of Chronic Lymphocytic Leukemia Evolution
2018 Chaligne, R; Gaiti, F; Izzo, F; Kothen-Hill, S; Gu, Hc; Huang, K; Risso, D; Schulman, R; Brand, Rm; Lee, Sc; Poran, A; Kim, Kt; Pastore, A; Alonso, A; Gnirke, A; Wu, Cj; Abdel-Wahab, Oi; Meissner, A; Landau, Da
Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism
2018 Koberstein, John N; Poplawski, Shane G; Wimmer, Mathieu E; Porcari, Giulia; Kao, Charlly; Gomes, Bruce; Risso, Davide; Hakonarson, Hakon; Zhang, Nancy R; Schultz, Robert T; Abel, Ted; Peixoto, Lucia
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets
2018 Risso, Davide; Purvis, Liam; Fletcher, Russell; Das, Diya; Ngai, John; Dudoit, Sandrine; Purdom, Elizabeth
A general and flexible method for signal extraction from single-cell RNA-seq data
2018 Risso, Davide; Perraudeau, Fanny; Gribkova, Svetlana; Dudoit, Sandrine; Vert, Jean-Philippe
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
2018 Van den Berge, Koen; Perraudeau, Fanny; Soneson, Charlotte; Love, Michael I.; Risso, Davide; Vert, Jean-Philippe; Robinson, Mark D.; Dudoit, Sandrine; Clement, Lieven
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