BARUZZO, GIACOMO
BARUZZO, GIACOMO
Dipartimento di Ingegneria dell'Informazione - DEI
Advances and challenges in cell-cell communication inference: a comprehensive review of tools, resources, and future directions
2025 Cesaro, Giulia; Nagai, James Shiniti; Gnoato, Nicolò; Chiodi, Alice; Tussardi, Gaia; Klöker, Vanessa; Musumarra, Carmelo Vittorio; Mosca, Ettore; Costa, Ivan G; Di Camillo, Barbara; Calura, Enrica; Baruzzo, Giacomo
Cell-specific Graph Operation Strategy on Signaling Intracellular Pathways
2025 Cesaro, Giulia; Nagai, James; Baruzzo, Giacomo; Di Camillo, Barbara; Costa, Ivan
Differential cellular communication inference framework for large-scale single-cell RNA-sequencing data
2025 Cesaro, Giulia; Baruzzo, Giacomo; Tussardi, Gaia; Di Camillo, Barbara
Intracellular signaling pathway reconstruction at single-cell resolution
2025 Cesaro, Giulia; Nagai, James; Baruzzo, Giacomo; Di Camillo, Barbara; Costa, Ivan
Multilevel Network Visualization for Deciphering Dysregulated Cellular Signalling
2025 Tussardi, Gaia; Cesaro, Giulia; Baruzzo, Giacomo; Di Camillo, Barbara
Preface
2025 Vettoretti, Martina; Tavazzi, Erica; Longato, Enrico; Baruzzo, Giacomo; Bellato, Massimo
quickSparseM: a library for memory- and time-efficient computation on large, sparse matrices with application to omics data
2025 Baruzzo, Giacomo; Cesaro, Giulia; Camillo, Barbara Di
Realistic simulation of NGS reads from tumoral samples with MOV&RSim
2025 Longhin, Francesca; Baruzzo, Giacomo; Hazizaj, Enidia; Boscarino, Diego; Paladin, Dino; Di Camillo, Barbara
Sustainable computation on large, sparse omics matrices with quickSparseM
2025 Baruzzo, Giacomo; Cesaro, Giulia; Di Camillo, Barbara
A standardised open science framework for sharing and re-analysing neural data acquired to continuous stimuli
2024 Di Liberto, Giovanni M.; Nidiffer, Aaron; Crosse, Michael J.; Zuk, Nathaniel; Haro, Stephanie; Cantisani, Giorgia; Winchester, Martin M.; Igoe, Aoife; Mccrann, Ross; Chandra, Satwik; Lalor, Edmund C.; Baruzzo, Giacomo
Addressing the Biological Interpretation of High-Dimensional Cell-Cell Communication Data from Single Cell Transcriptomics Through an Interactive Web Application
2024 Tussardi, Gaia; Cesaro, Giulia; DI CAMILLO, Barbara; Baruzzo, Giacomo
Comprehensive benchmarking of network inference methods for 16S rDNA-Seq data
2024 Mariotto, Piero; Baldan, Matteo; DI CAMILLO, Barbara; Baruzzo, Giacomo
Enhancing variant calling and interpretation pipelines using data-driven in-silico simulation and artificial-intelligence
2024 Longhin, Francesca; Baruzzo, Giacomo; DI CAMILLO, Barbara
Inferring microbial ecological networks from metagenomics data, when should we trust the results?
2024 Mariotto, Piero; Baldan, Matteo; DI CAMILLO, Barbara; Baruzzo, Giacomo
INTERACT: A Novel Approach for Continuous Genotype-Phenotype Association Analysis
2024 Milia, Mikele; Baruzzo, Giacomo; DI CAMILLO, Barbara
Interactive exploration of cell-cell communication results from single-cell RNA sequencing data through a webapp
2024 Tussardi, Gaia; Cesaro, Giulia; DI CAMILLO, Barbara; Baruzzo, Giacomo
Limitations of the co-occurrence-based approach in the inference of microbiota interaction networks.
2024 Mariotto, Piero; Baldan, Matteo; DI CAMILLO, Barbara; Baruzzo, Giacomo
Network-Based Cross-Entropy Approach for Continuous Genotype-Phenotype Association Analysis
2024 Milia, Mikele; Baruzzo, Giacomo; DI CAMILLO, Barbara
Selected Articles From The 18th Conference On Computational Intelligence Methods For Bioinformatics & Biostatistics: medical informatics and decision making
2024 Longato, Enrico; Tavazzi, Erica; Vettoretti, Martina; Baruzzo, Giacomo; Bellato, Massimo; Lovino, Marta
Simulation of bacteria interaction networks: from topology to species abundances
2024 Baldan, Matteo; Baruzzo, Giacomo; Cappellato, Marco; Rossato, Ada; Di Camillo, Barbara