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Titolo Data di pubblicazione Autori Rivista Serie Titolo libro
Motifs in Ziv-Lempel-Welch Clef 2004 APOSTOLICO, ALBERTOCOMIN, MATTEO + DATA COMPRESSION CONFERENCE - DCC Data Compression Conference
Modelling a Protein Structure Comparison Application on the Grid Using PROTEUS 2004 COMIN, MATTEOFERRARI, CARLOGUERRA, CONCETTINA + - LECTURE NOTES IN COMPUTER SCIENCE Scientific Application of Grid Computing
PROuST: a server based comparison method of three-dimensional structures of proteins using indexing techniques 2004 COMIN, MATTEOGUERRA, CONCETTINAZANOTTI, GIUSEPPE JOURNAL OF COMPUTATIONAL BIOLOGY - -
Grid Deployment of Bioinformatics Applications: a Case Study in Protein Similarity Determination 2004 COMIN, MATTEOFERRARI, CARLOGUERRA, CONCETTINA PARALLEL PROCESSING LETTERS - -
Conservative Extraction of Over-represented Extensible Motifs 2005 APOSTOLICO, ALBERTOCOMIN, MATTEO + BIOINFORMATICS - ISMB (Supplement of Bioinformatics)
Bridging Lossy and Lossless Compression by Motif Pattern Discovery 2005 APOSTOLICO, ALBERTOCOMIN, MATTEO + - - General Theory of Information Transfer and Combinatorics, Vol. II of a Report on a Research Project at the ZIF (Center of interdisciplinary studies)
Bridging lossy and lossless compression by motif pattern discovery 2005 APOSTOLICO, ALBERTOCOMIN, MATTEO + ELECTRONIC NOTES IN DISCRETE MATHEMATICS - -
Modelling a Protein Structure Comparison Application on the Grid using PROTEUS 2005 COMIN, MATTEOFERRARI, CARLO + LECTURE NOTES IN COMPUTER SCIENCE - -
Off-line Compression by Extensible Motifs 2005 APOSTOLICO, ALBERTOCOMIN, MATTEO + DATA COMPRESSION CONFERENCE - IEEE DCC Data Compression Conference
Mining, Compressing and Classifying with Extensible Motifs 2006 APOSTOLICO, ALBERTOCOMIN, MATTEO + ALGORITHMS FOR MOLECULAR BIOLOGY - -
High-Performance Protein Structure Comparison 2006 COMIN, MATTEO + - - Proceedings of the Tenth Annual International Conference on Research in Computational Molecular Biology, RECOMB (2006)
Application Re-Structuring and Data Management on a GRID Environment: a Case Study for Bioinformatics 2006 COMIN, MATTEO + - - Proceedings of IEEE International Workshop on High Performance Computational Biology
Algorithmic Re-Structuring and Data Replication for Protein Structure Comparison on a Grid 2007 CIRIELLO, GIOVANNICOMIN, MATTEOGUERRA, CONCETTINA FUTURE GENERATION COMPUTER SYSTEMS - -
Subtle Motifs Discovery for Detection of DNA Regulatory Sites 2007 COMIN, MATTEO + - - Proceeding of Asian-Pacifc Bioinformatics Conference, APBC 2007
Mining Over-Represented 3D Patterns of Secondary Structures in Proteins 2007 COMIN, MATTEOGUERRA, CONCETTINAG, ZANOTTI - - PROC. of BIOKDD
Method and structure for lossy compression of continuous data with extensible motifs 2007 COMIN, MATTEO + - - -
Detection of Subtle Variations as Consensus Motifs 2008 COMIN, MATTEO + - - SAIL “ String Algorithms, Information and Learning,
Method and apparatus for detection consensus motifs in data sequences 2008 COMIN, MATTEO + - - -
Mining Over-Represented 3D Patterns of Secondary Structures in Proteins 2008 COMIN, MATTEOGUERRA, CONCETTINAZANOTTI, GIUSEPPE JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY - -
Binding Balls: Fast detection of Binding Sites using a property of Spherical Fourier Transform 2009 COMIN, MATTEOGUERRA, CONCETTINA + JOURNAL OF COMPUTATIONAL BIOLOGY - -
Invariant geometric properties of secondary structure elements in proteins 2010 COMIN, MATTEOGUERRA, CONCETTINAZANOTTI, GIUSEPPE - - Biological data mining
Remote Homology Detection of Protein Sequences 2010 COMIN, MATTEO + DAGSTUHL SEMINAR PROCEEDINGS - Dagstuhl Seminar Proceedings
Classification of Protein Sequences by means of Irredundant Patterns 2010 COMIN, MATTEO + BMC BIOINFORMATICS - -
VARUN: Discovering Extensible Motifs under Saturation Constraints 2010 APOSTOLICO, ALBERTOCOMIN, MATTEO + IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Methods and systems for conservative extraction of over-represented extensible motifs 2011 COMIN, MATTEO + - - -
The IrredundantClass Method for Remote Homology Detection of Protein Sequences 2011 COMIN, MATTEO + JOURNAL OF COMPUTATIONAL BIOLOGY - -
Alignment-Free Phylogeny of Whole Genomes using Underlying Subwords 2012 COMIN, MATTEO + ALGORITHMS FOR MOLECULAR BIOLOGY - -
Whole-Genome Phylogeny by Virtue of Unic Subwords 2012 COMIN, MATTEO + ALGORITHMS FOR MOLECULAR BIOLOGY - 23rd International Workshop on Database and Expert Systems Applications
Efficient parallel construction of suffix trees for genomes larger than main memoryProceedings of the 20th European MPI Users' Group Meeting on - EuroMPI '13 2013 COMIN, MATTEO + - - Proceedings of the 20th European MPI Users' Group Meeting on - EuroMPI '13
Protein Structure Comparison, High Performance Computing 2013 COMIN, MATTEO + - - Encyclopedia of System Biology
Comparing ranking and filtering motifs with character classes: application to biological sequence analysis 2013 COMIN, MATTEO + - WILEY SERIES ON BIOINFORMATICS Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data
Ultrametric networks: a new tool for phylogenetic analysis 2013 COMIN, MATTEO + ALGORITHMS FOR MOLECULAR BIOLOGY - -
Filtering Degenerate Patterns with Application to Protein Sequence Analysis 2013 COMIN, MATTEO + ALGORITHMS - -
Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes 2013 ANTONELLO, MORRISCOMIN, MATTEO LECTURE NOTES IN COMPUTER SCIENCE - LNBI
Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection2013 24th International Workshop on Database and Expert Systems Applications 2013 COMIN, MATTEO + - - 2013 24th International Workshop on Database and Expert Systems Applications
Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes 2014 COMIN, MATTEOANTONELLO, MORRIS IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Comparing, ranking, and filtering motifs with character classes: Application to biological sequences analysis 2014 Comin M.Verzotto D. - - Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data
Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns 2014 COMIN, MATTEOSCHIMD, MICHELE BMC BIOINFORMATICS - -
QCluster: Extending Alignment-Free Measures with Quality Values for Reads ClusteringAlgorithms in Bioinformatics 2014 COMIN, MATTEOLEONI, ANDREASCHIMD, MICHELE - - Lecture Notes in Computer ScienceAlgorithms in Bioinformatics
Pattern Recognition in Bioinformatics 2014 COMIN, MATTEO + - - -
Parallel Continuous Flow: A Parallel Suffix Tree Construction Tool for Whole Genomes 2014 COMIN, MATTEO + JOURNAL OF COMPUTATIONAL BIOLOGY - -
Beyond fixed-resolution alignment-free measures for mammalian enhancers sequence comparison 2014 COMIN, MATTEO + IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Clustering of reads with alignment-free measures and quality values 2015 COMIN, MATTEOLEONI, ANDREASCHIMD, MICHELE ALGORITHMS FOR MOLECULAR BIOLOGY - -
Fast Alignment-free Comparison for Regulatory Sequences using Multiple Resolution Entropic Profiles 2015 ANTONELLO, MORRISCOMIN, MATTEO - - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms,
Alignment-Free Measures for Whole-Genome Comparison 2015 COMIN, MATTEOVERZOTTO, DAVIDE - - Pattern Recognition in Computational Molecular Biology: Techniques and Approaches
MetaProb: Accurate metagenomic reads binning based on probabilistic sequence signatures 2016 GIROTTO, SAMUELEPIZZI, CINZIACOMIN, MATTEO BIOINFORMATICS - -
On the comparison of regulatory sequences with multiple resolution Entropic Profiles 2016 COMIN, MATTEOANTONELLO, MORRIS BMC BIOINFORMATICS - -
Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values 2016 COMIN, MATTEOSCHIMD, MICHELE BMC MEDICAL GENOMICS - -
Higher recall in metagenomic sequence classification exploiting Overlapping Reads 2016 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA - - 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2016
SKraken: Fast and Sensitive Classification of Short Metagenomic Reads based on Filtering Uninformative k-mers 2017 COMIN, MATTEOMARCHIORI, DAVIDE - - Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS,
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