Sfoglia per Autore
Zero-imputation in 16S rRNA gene studies: do we need it?
2020 Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data
2020 Tanevski, Jovan; Nguyen, Thin; Truong, Buu; Karaiskos, Nikos; Eren Ahsen, Mehmet; Zhang, Xinyu; Shu, Chang; Xu, Ke; Liang, Xiaoyu; Hu, Ying; VV Pham, Hoang; Xiaomei, Li; D Le, Thuc; L Tarca, Adi; Bhatti, Gaurav; Romero, Roberto; Karathanasis, Nestoras; Loher, Phillipe; Chen, Yang; Ouyang, Zhengqing; Mao, Disheng; Zhang, Yuping; Zand, Maryam; Ruan, Jianhua; Hafemeister, Christoph; Qiu, Peng; Tran, Duc; Nguyen, Tin; Gabor, Attila; Yu, Thomas; Guinney, Justin; Glaab, Enrico; Krause, Roland; Banda, Peter; SCTC Consortium, Dream; Baruzzo, Giacomo; Cappellato, Marco; Zorzan, Irene; DEL FAVERO, Simone; Schenato, Luca; Vandin, Fabio; DI CAMILLO, Barbara; Gupta, Shruti; Kumar Verma, Ajay; Ahmad, Shandar; Sharma, Ronesh; Vans, Edwin; Sharma, Alok; Patil, Ashwini; Carrea, Alejandra; Alonso, Andres M.; Diambra, Luis; Narsapuram, Vijay; Kaikala, Vinay; Potnuru, Chaitanyam; Kumar, Sunil; Peng, Jiajie; Wang, Xiaoyu; Shang, Xuequn; Livne, Dani; Snir, Tom; Philip, Hagit; Zilberberg, Alona; Efroni, Sol; Reza Hassanzadeh, Hamid; Hassanzadeh, Reihaneh; Jahanshahi, Ghazal; Naddaf-Sh, M-Mahdi; Drayer, Phillip M.; Naddaf-Sh, Sadra; Ben Guebila, Marouen; Wan, Changlin; Cao, Yuchen; Meamardoost, Saber; Papili Gao, Nan; Gunawan, Rudiyanto; Stolovitzky, Gustavo; Rajewsky, Nikolaus; Saez-Rodriguez, Julio; Meyer, Pablo
SPARSim single cell: a count data simulator for scRNA-seq data
2019 Baruzzo, Giacomo; Patuzzi, Ilaria; Di Camillo, Barbara
MAST: A Multi-Agent based Spatio-Temporal Model of the interaction between immune system and tumor growth
2019 Baruzzo, Giacomo; Finco, Giovanni; Morandini, Francesco; Alotto, Piergiorgio; DI CAMILLO, Barbara
Reliable simulation of count data for single cell RNA sequencing
2019 Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
SPARSim Single Cell: a count data simulator for single cell RNA-seq data
2019 Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
SPARSim Single Cell: a count data simulator for single cell RNA-seq data
2019 Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
IDENTIFICATION OF MIRNA AND TARGET GENES IN THE TRANSCRIPTOME ANALYSIS OF CD34+/LIN- CELLS OF PATIENTS WITH CHRONIC MYELOID LEUKEMIA IN THE CHRONIC PHASE AFTER 12 MONTHS OF NILOTINIB THERAPY
2019 Trojani, A; Pungolino, E; Dal Molin, A; Bossi, Le; Rossi, G; D'Adda, M; Perego, A; Elena, C; Turrini, M; Borin, L; Bucelli, C; Malato, S; Carraro, Mc; Spina, F; Latargia, Ml; Artale, S; Spedini, P; Anghilieri, M; Di Camillo, B; Baruzzo, G; De Canal, G; Iurlo, A; Morra, E; Cairoli, R
Progressive Down Regulation of JAK-STAT, Cell Cycle, and ABC Transporter Genes in CD34+/Lin- Cells of Chronic-Phase Chronic Myeloid Leukemia (CP-CML) Patients at Diagnosis Vs. 12 Months of Nilotinib Treatment Vs. Healthy Subjects
2019 Trojani, Alessandra; Pungolino, Ester; Rossi, Giuseppe; D'Adda, Mariella; Bossi, Luca Emanuele; Baruzzo, Giacomo; Di Camillo, Barbara; Perego, Alessandra; Turrini, Mauro; Elena, Chiara; Borin, Lorenza Maria; Iurlo, Alessandra; Malato, Simona; Spina, Francesco; Latargia, Maria Luisa; Spedini, Pierangelo; Artale, Salvatore; Anghilieri, Michela; Carraro, Maria Cristina; Bucelli, Cristina; De Canal, Gabriella; Morra, Enrica; Cairoli, Roberto
Nilotinib interferes with cell cycle, ABC transporters and JAK-STAT signaling pathway in CD34+/lin- cells of patients with chronic phase chronic myeloid leukemia after 12 months of treatment
2019 Trojani, Alessandra; Pungolino, Ester; Dal Molin, Alessandra; Lodola, Milena; Rossi, Giuseppe; D'Adda, Mariella; Perego, Alessandra; Elena, Chiara; Turrini, Mauro; Borin, Lorenza; Bucelli, Cristina; Malato, Simona; Carraro, Maria Cristina; Spina, Francesco; Latargia, Maria Luisa; Artale, Salvatore; Spedini, Pierangelo; Anghilieri, Michela; Di Camillo, Barbara; Baruzzo, Giacomo; De Canal, Gabriella; Iurlo, Alessandra; Morra, Enrica; Cairoli, Roberto
metaSPARSim: a 16S rRNA gene sequencing count data simulator
2019 Patuzzi, Ilaria; Baruzzo, Giacomo; Losasso, Carmen; Ricci, Antonia; Di Camillo, Barbara
Nilotinib Deregulates Cell Cycle Checkpoints, ABC Transporters Genes and JAK-STAT Signaling Pathway of CD34+/Lin- Cells in Chronic-Phase Chronic Myeloid Leukemia (CP-CML) Patients after 12 Months of Treatment
2018 Alessandra, Trojani; Ester, Pungolino; Giuseppe, Rossi; Mariella, D'Adda; Milena, Lodola; DAL MOLIN, Alessandra; Baruzzo, Giacomo; Alessandra, Perego; Mauro, Turrini; Chiara, Elena; Lorenza Maria Borin, ; Alessandra, Iurlo; Simona, Malato; Francesco, Spina; Maria Luisa Latargia, ; Pierangelo, Spedini; Salvatore, Artale; Michela, Anghilieri; Carraro Maria Cristina, ; Cristina, Bucelli; Gabriella De Canal, ; Enrica, Morra; Roberto, Cairoli
MAST: a Multi-Agent based Spatio-Temporal model of the interaction between immune system and tumor growth
2018 Baruzzo, Giacomo; Finco, Giovanni; Morandini, Francesco; Alotto, Piergiorgio; DI CAMILLO, Barbara
SPARSim Single Cell: a count data simulator for single cell RNA-seq data
2018 Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
SPARSim: taking account of data sparsity in single cell and 16S rRNA gene sequencing
2018 Patuzzi, Ilaria; Baruzzo, Giacomo; Ricci, Antonia; Losasso, Carmen; DI CAMILLO, Barbara
Exploring single-cell RNA-seq data: a survey on sparsity and multimodality
2018 DAL MOLIN, Alessandra; Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene
2018 Sambo, Francesco; Finotello, Francesca; Lavezzo, Enrico; Baruzzo, Giacomo; Masi, Giulia; Peta, Elektra; Falda, Marco; Toppo, Stefano; Barzon, Luisa; Di Camillo, Barbara
Improving the RNA-Seq analysis pipeline: read alignment and expression level quantification
2017 Baruzzo, Giacomo
Evaluation of differential expression analysis methods for single-cell RNA-sequencing
2017 DAL MOLIN, Alessandra; Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
Improving the RNA-Seq analysis pipeline: read alignment and expression level quantification
2017 Baruzzo, Giacomo
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