Padua Research Archive, l’archivio istituzionale della produzione scientifica dell’Università degli Studi di Padova, ha lo scopo di raccogliere, documentare, conservare e pubblicare, anche ad accesso aperto, i prodotti della ricerca dell’Ateneo. Padua Research Archive utilizza la piattaforma IRIS (Institutional Research Information System) sviluppata da Cineca.

FALDA, MARCO

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Pubblicazioni (Tutti)

Risultati 1 - 20 di 58 (tempo di esecuzione: 0.001 secondi).

	Titolo	Data di pubblicazione	Autori	Rivista	Titolo libro
1	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	2019	Zhou N; Jiang Y; Bergquist TR; Lee AJ; Kacsoh BZ; Crocker AW; Lewis KA; Georghiou G; Nguyen HN; Hamid MN; Davis L; Dogan T; Atalay V; Rifaioglu AS; Dalkıran A; Cetin Atalay R; Zhang C; Hurto RL; Freddolino PL; Zhang Y; Bhat P; Supek F; Fernández JM; Gemovic B; Perovic VR; Davidović RS; Sumonja N; Veljkovic N; Asgari E; Mofrad MRK; Profiti G; Savojardo C; Martelli PL; Casadio R; Boecker F; Schoof H; Kahanda I; Thurlby N; McHardy AC; Renaux A; Saidi R; Gough J; Freitas AA; Antczak M; Fabris F; Wass MN; Hou J; Cheng J; Wang Z; Romero AE; Paccanaro A; Yang H; Goldberg T; Zhao C; Holm L; Törönen P; Medlar AJ; Zosa E; Borukhov I; Novikov I; Wilkins A; Lichtarge O; Chi PH; Tseng WC; Linial M; Rose PW; Dessimoz C; Vidulin V; Dzeroski S; Sillitoe I; Das S; Lees JG; Jones DT; Wan C; Cozzetto D; Fa R; Torres M; Warwick Vesztrocy A; Rodriguez JM; Tress ML; Frasca M; Notaro M; Grossi G; Petrini A; Re M; Valentini G; Mesiti M; Roche DB; Reeb J; Ritchie DW; Aridhi S; Alborzi SZ; Devignes MD; Koo DCE; Bonneau R; Gligorijević V; Barot M; Fang H; TOPPO, STEFANO ; LAVEZZO, ENRICO ; FALDA, MARCO ; BERSELLI, MICHELE ; TOSATTO, SILVIO ; CARRARO, ELENA MARIA ; PIOVESAN, DAMIANO ; Ur Rehman H; Mao Q; Zhang S; Vucetic S; Black GS; Jo D; Suh E; Dayton JB; Larsen DJ; Omdahl AR; McGuffin LJ; Brackenridge DA; Babbitt PC; Yunes JM; Fontana P; Zhang F; Zhu S; You R; Zhang Z; Dai S; Yao S; Tian W; Cao R; Chandler C; Amezola M; Johnson D; Chang JM; Liao WH; Liu YW; Pascarelli S; Frank Y; Hoehndorf R; Kulmanov M; Boudellioua I; Politano G; Di Carlo S; Benso A; Hakala K; Ginter F; Mehryary F; Kaewphan S; Björne J; Moen H; Tolvanen MEE; Salakoski T; Kihara D; Jain A; Šmuc T; Altenhoff A; Ben-Hur A; Rost B; Brenner SE; Orengo CA; Jeffery CJ; Bosco G; Hogan DA; Martin MJ; O'Donovan C; Mooney SD; Greene CS; Radivojac P; Friedberg I	GENOME BIOLOGY
2	Fast Regulation of Hormone Metabolism Contributes to Salt Tolerance in Rice (Oryza sativa spp. Japonica, L.) by Inducing Specific Morpho-Physiological Responses	2018	FORMENTIN, ELIDE ; BARIZZA, ELISABETTA ; STEVANATO, PIERGIORGIO ; FALDA, MARCO ; MASSA, FEDERICA ; Tarkowskà, Danuše; Novák, Ondřej; LO SCHIAVO, FIORELLA	PLANTS
3	Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene	2018	SAMBO, FRANCESCO ; FINOTELLO, FRANCESCA ; LAVEZZO, ENRICO ; BARUZZO, GIACOMO ; MASI, GIULIA ; PETA, ELEKTRA ; FALDA, MARCO ; TOPPO, STEFANO ; BARZON, LUISA ; DI CAMILLO, BARBARA	BMC BIOINFORMATICS
4	Redox status in a model of cancer stem cells	2017	ZACCARIN, MATTIA ; BOSELLO TRAVAIN, VALENTINA ; DI PAOLO, MARIA LUISA ; FALDA, MARCO ; MAIORINO, MATILDE ; MIOTTO, GIOVANNI ; PICCOLO, STEFANO ; ROVERI, ANTONELLA ; URSINI, FULVIO ; VENERANDO, RINA ; TOPPO, STEFANO	ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
5	Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms	2017	Bianco, Luca; Riccadonna, Samantha; LAVEZZO, ENRICO ; FALDA, MARCO ; FORMENTIN, ELIDE ; Cavalieri, Duccio; TOPPO, STEFANO ; Fontana, Paolo	BIOINFORMATICS
6	An expanded evaluation of protein function prediction methods shows an improvement in accuracy	2016	Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben Hur, Asa; Koo, Da Chen Emily; Penfold Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching Tai; Hsu, Wen Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele; Melidoni, Anna N.; Mutowo Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon Charles; Das, Sayoni; Dawson, Natalie L.; Lee, David; Lees, Jonathan G.; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E.; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño Cortés, Adriana E.; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M.; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; FALDA, MARCO ; Fontana, Paolo; LAVEZZO, ENRICO ; TOPPO, STEFANO ; FERRARI, CARLO ; Giollo, Manuel; Piovesan, Damiano; TOSATTO, SILVIO ; del Pozo, Angela; Fernández, José M.; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L.; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W.; van Dijk, Aalt D. J.; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida e. Silva, Danillo C.; Vencio, Ricardo Z. N.; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J. E.; Wass, Mark N.; Huntley, Rachael P.; Martin, Maria J.; O'Donovan, Claire; Robinson, Peter N.; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C.; Brenner, Steven E.; Linial, Michal; Orengo, Christine A.; Rost, Burkhard; Greene, Casey S.; Mooney, Sean D.; Friedberg, Iddo; Radivojac, Predrag	GENOME BIOLOGY
7	Eliciting the Functional Taxonomy from protein annotations and taxa	2016	FALDA, MARCO ; LAVEZZO, ENRICO ; Fontana, Paolo; Bianco, Luca; BERSELLI, MICHELE ; FORMENTIN, ELIDE ; TOPPO, STEFANO	SCIENTIFIC REPORTS
8	Enhancing protein function prediction with taxonomic constraints - The Argot2.5 web server	2016	LAVEZZO, ENRICO ; FALDA, MARCO ; Fontana, Paolo; Bianco, Luca; TOPPO, STEFANO	METHODS
9	keeSeek: searching distant non-existing words in genomes for PCR-based applications.	2014	FALDA, MARCO ; Fontana P; BARZON, LUISA ; TOPPO, STEFANO ; LAVEZZO, ENRICO	BIOINFORMATICS
10	Quantitative label-free redox proteomics of reversible cysteine oxidation in red blood cell membranes	2014	ZACCARIN, MATTIA ; FALDA, MARCO ; ROVERI, ANTONELLA ; BOSELLO TRAVAIN, VALENTINA ; BORDIN, LUCIANA ; MAIORINO, MATILDE ; URSINI, FULVIO ; TOPPO, STEFANO	FREE RADICAL BIOLOGY & MEDICINE
11	Setting up of an innovative procedure for redox proteomics and its application for definition of the redox status of a cellular model.	2013	ZACCARIN, MATTIA ; FALDA, MARCO ; ROVERI, ANTONELLA ; TIBALDI, ELENA ; TOPPO, STEFANO ; URSINI, FULVIO		VIII ItPA annual congress, Abstract Volume
12	Enrichment of viral proteins annotation with Argot2	2013	LAVEZZO, ENRICO ; BARZON, LUISA ; FALDA, MARCO ; Fontana P; PALU', GIORGIO ; TOPPO, STEFANO		/
13	A large-scale evaluation of computational protein function prediction	2013	Predrag Radivojac; Wyatt T. Clark; Tal Ronnen Oron; Alexandra M. Schnoes; Tobias Wittkop; Artem Sokolov; Kiley Graim; Christopher Funk; Karin Verspoor; Asa Ben Hur; Gaurav Pandey; Jeffrey M. Yunes; Ameet S. Talwalkar; Susanna Repo; Michael L. Souza; Damiano Piovesan; Rita Casadio; Zheng Wang; Jianlin Cheng; Hai Fang; Julian Gough; Patrik Koskinen; Petri Törönen; Jussi Nokso Koivisto; Liisa Holm; Domenico Cozzetto; Daniel W. A. Buchan; Kevin Bryson; David T. Jones; Bhakti Limaye; Harshal Inamdar; Avik Datta; Sunitha K. Manjari; Rajendra Joshi; Meghana Chitale; Daisuke Kihara; Andreas M. Lisewski; Serkan Erdin; Eric Venner; Olivier Lichtarge; Robert Rentzsch; Haixuan Yang; Alfonso E. Romero; Prajwal Bhat; Alberto Paccanaro; Tobias Hamp; Rebecca Kaßner; Stefan Seemayer; Esmeralda Vicedo; Christian Schaefer; Dominik Achten; Florian Auer; Ariane Boehm; Tatjana Braun; Maximilian Hecht; Mark Heron; Peter Hönigschmid; Thomas A. Hopf; Stefanie Kaufmann; Michael Kiening; Denis Krompass; Cedric Landerer; Yannick Mahlich; Manfred Roos; Jari Björne; Tapio Salakoski; Andrew Wong; Hagit Shatkay; Fanny Gatzmann; Ingolf Sommer; Mark N. Wass; Michael J. E. Sternberg; Nives Škunca; Fran Supek; Matko Bošnjak; Panče Panov; Sašo Džeroski; Tomislav Šmuc; Yiannis A. I. Kourmpetis; Aalt D. J. van Dijk; Cajo J. F. ter Braak; Yuanpeng Zhou; Qingtian Gong; Xinran Dong; Weidong Tian; FALDA, MARCO ; Paolo Fontana; LAVEZZO, ENRICO ; DI CAMILLO, BARBARA ; TOPPO, STEFANO ; Liang Lan; Nemanja Djuric; Yuhong Guo; Slobodan Vucetic; Amos Bairoch; Michal Linial; Patricia C. Babbitt; Steven E. Brenner; Christine Orengo; Burkhard Rost; Sean D. Mooney; Iddo Friedberg	NATURE METHODS
14	keeSeek: a tool for distant k-mer generation	2013	FALDA, MARCO ; Fontana P; BARZON, LUISA ; TOPPO, STEFANO ; LAVEZZO, ENRICO		Proceedings of BITS 2013
15	Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak	2013	LAVEZZO, ENRICO ; TOPPO, STEFANO ; FRANCHIN, ELISA ; DI CAMILLO, BARBARA ; FINOTELLO, FRANCESCA ; FALDA, MARCO ; MANGANELLI, RICCARDO ; PALU', GIORGIO ; BARZON, LUISA	BMC INFECTIOUS DISEASES
16	Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.	2012	FALDA, MARCO ; TOPPO, STEFANO ; PESCAROLO, ALESSANDRO ; LAVEZZO, ENRICO ; DI CAMILLO, BARBARA ; FACCHINETTI, ANDREA ; Cilia E; Velasco R; Fontana P.	BMC BIOINFORMATICS
17	SimBioNeT: A Simulator of Biological Network Topology	2012	DI CAMILLO, BARBARA ; FALDA, MARCO ; TOFFOLO, GIANNA MARIA ; COBELLI, CLAUDIO	IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
18	High confidence and sensitivity four-dimensional fractionation for human plasma proteome analysis.	2012	MILLIONI, RENATO ; Tolin S; FADINI, GIAN PAOLO ; FALDA, MARCO ; van Breukelen B; TESSARI, PAOLO ; ARRIGONI, GIORGIO	AMINO ACIDS
19	Can we go beyond sequence similarity to predict protein function?	2012	Fontana P; SANAVIA, TIZIANA ; FACCHINETTI, ANDREA ; LAVEZZO, ENRICO ; FALDA, MARCO ; Cavalieri D; DI CAMILLO, BARBARA ; TOPPO, STEFANO		Automated Function Prediction SIG 2012: Critical Assessment of Function Annotations (CAFA)
20	Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data	2012	FINOTELLO, FRANCESCA ; LAVEZZO, ENRICO ; Fontana P; PERUZZO, DENIS ; Albiero A; BARZON, LUISA ; FALDA, MARCO ; DI CAMILLO, BARBARA ; TOPPO, STEFANO	BRIEFINGS IN BIOINFORMATICS

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FALDA, MARCO

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Dipartimento di Neuroscienze - DNS