PIOVESAN, DAMIANO
PIOVESAN, DAMIANO
Dipartimento di Scienze Biomediche - DSB
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
2022 Varadi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan, Damiano; Salladini, Edoardo; Salzberg, Steven L; Sommer, Markus J; Steinegger, Martin; Suhajda, Erzsebet; Svergun, Dmitri; Tenorio-Ku, Luiggi; Tosatto, Silvio; Tunyasuvunakool, Kathryn; Waterhouse, Andrew Mark; Žídek, Augustin; Schwede, Torsten; Orengo, Christine; Velankar, Sameer
A comprehensive assessment of long intrinsic protein disorder from the DisProt database
2018 Necci, Marco; Piovesan, Damiano; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C. E.
A large-scale evaluation of computational protein function prediction
2013 Predrag, Radivojac; Clark, Wyatt T.; Tal Ronnen Oron, ; Schnoes, Alexandra M.; Tobias, Wittkop; Artem, Sokolov; Kiley, Graim; Christopher, Funk; Karin, Verspoor; Asa Ben Hur, ; Gaurav, Pandey; Yunes, Jeffrey M.; Talwalkar, Ameet S.; Susanna, Repo; Souza, Michael L.; Piovesan, Damiano; Rita, Casadio; Zheng, Wang; Jianlin, Cheng; Hai, Fang; Julian, Gough; Patrik, Koskinen; Petri, Törönen; Jussi Nokso Koivisto, ; Liisa, Holm; Domenico, Cozzetto; Buchan, Daniel W. A.; Kevin, Bryson; Jones, David T.; Bhakti, Limaye; Harshal, Inamdar; Avik, Datta; Manjari, Sunitha K.; Rajendra, Joshi; Meghana, Chitale; Daisuke, Kihara; Lisewski, Andreas M.; Serkan, Erdin; Eric, Venner; Olivier, Lichtarge; Robert, Rentzsch; Haixuan, Yang; Romero, Alfonso E.; Prajwal, Bhat; Alberto, Paccanaro; Tobias, Hamp; Rebecca, Kaßner; Stefan, Seemayer; Esmeralda, Vicedo; Christian, Schaefer; Dominik, Achten; Florian, Auer; Ariane, Boehm; Tatjana, Braun; Maximilian, Hecht; Mark, Heron; Peter, Hönigschmid; Hopf, Thomas A.; Stefanie, Kaufmann; Michael, Kiening; Denis, Krompass; Cedric, Landerer; Yannick, Mahlich; Manfred, Roos; Jari, Björne; Tapio, Salakoski; Andrew, Wong; Hagit, Shatkay; Fanny, Gatzmann; Ingolf, Sommer; Wass, Mark N.; Sternberg, Michael J. E.; Nives, Škunca; Fran, Supek; Matko, Bošnjak; Panče, Panov; Sašo, Džeroski; Tomislav, Šmuc; Kourmpetis, Yiannis A. I.; van Dijk, Aalt D. J.; ter Braak, Cajo J. F.; Yuanpeng, Zhou; Qingtian, Gong; Xinran, Dong; Weidong, Tian; Falda, Marco; Paolo, Fontana; Lavezzo, Enrico; DI CAMILLO, Barbara; Toppo, Stefano; Liang, Lan; Nemanja, Djuric; Yuhong, Guo; Slobodan, Vucetic; Amos, Bairoch; Michal, Linial; Babbitt, Patricia C.; Brenner, Steven E.; Christine, Orengo; Burkhard, Rost; Mooney, Sean D.; Iddo, Friedberg
A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication
2020 Paladin, L.; Necci, M.; Piovesan, D.; Mier, P.; Andrade-Navarro, M. A.; Tosatto, S. C. E.
A STRP-ed definition of Structured Tandem Repeats in Proteins
2023 Monzon, Alexander Miguel; Arrías, Paula Nazarena; Elofsson, Arne; Mier, Pablo; Andrade-Navarro, Miguel A; Bevilacqua, Martina; Clementel, Damiano; Bateman, Alex; Hirsh, Layla; Fornasari, Maria Silvina; Parisi, Gustavo; Piovesan, Damiano; Kajava, Andrey V; Tosatto, Silvio C E
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
2016 Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben Hur, Asa; Koo, Da Chen Emily; Penfold Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching Tai; Hsu, Wen Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele; Melidoni, Anna N.; Mutowo Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon Charles; Das, Sayoni; Dawson, Natalie L.; Lee, David; Lees, Jonathan G.; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E.; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño Cortés, Adriana E.; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M.; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio; del Pozo, Angela; Fernández, José M.; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L.; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W.; van Dijk, Aalt D. J.; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida e. Silva, Danillo C.; Vencio, Ricardo Z. N.; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J. E.; Wass, Mark N.; Huntley, Rachael P.; Martin, Maria J.; O'Donovan, Claire; Robinson, Peter N.; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C.; Brenner, Steven E.; Linial, Michal; Orengo, Christine A.; Rost, Burkhard; Greene, Casey S.; Mooney, Sean D.; Friedberg, Iddo; Radivojac, Predrag
An intrinsically disordered proteins community for elixir [version 1; peer review: 2 approved]
2019 Davey, N. E.; Babu, M. M.; Blackledge, M.; Bridge, A.; Capella-Gutierrez, S.; Dosztanyi, Z.; Drysdale, R.; Edwards, R. J.; Elofsson, A.; Felli, I. C.; Gibson, T. J.; Gutmanas, A.; Hancock, J. M.; Harrow, J.; Higgins, D.; Jeffries, C. M.; Le Mercier, P.; Meszaros, B.; Necci, M.; Notredame, C.; Orchard, S.; Ouzounis, C. A.; Pancsa, R.; Papaleo, E.; Pierattelli, R.; Piovesan, D.; Promponas, V. J.; Ruch, P.; Rustici, G.; Romero, P.; Sarntivijai, S.; Saunders, G.; Schuler, B.; Sharan, M.; Shields, D. C.; Sussman, J. L.; Tedds, J. A.; Tompa, P.; Turewicz, M.; Vondrasek, J.; Vranken, W. F.; Wallace, B. A.; Wichapong, K.; Tosatto, S. C. E.
APICURON: A database to credit and acknowledge the work of biocurators
2021 Hatos, A.; Quaglia, F.; Piovesan, D.; Tosatto, S. C. E.
Assessing predictors for new post translational modification sites: A case study on hydroxylation
2020 Piovesan, D.; Hatos, A.; Minervini, G.; Quaglia, F.; Monzon, A. M.; Tosatto, S. C. E.
BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences
2011 Piovesan, D.; Martelli, P. L.; Fariselli, Piero; Zauli, A.; Rossi, I.; Casadio, R.
CAID prediction portal: A comprehensive service for predicting intrinsic disorder and binding regions in proteins
2023 Del Conte, A.; Bouhraoua, A.; Mehdiabadi, M.; Clementel, D.; Monzon, A. M.; Tosatto, S. C. E.; Piovesan, D.
Critical assessment of protein intrinsic disorder prediction
2021 Necci, M.; Piovesan, D.; Hoque, M. T.; Walsh, I.; Iqbal, S.; Vendruscolo, M.; Sormanni, P.; Wang, C.; Raimondi, D.; Sharma, R.; Zhou, Y.; Litfin, T.; Galzitskaya, O. V.; Lobanov, M. Y.; Vranken, W.; Wallner, B.; Mirabello, C.; Malhis, N.; Dosztanyi, Z.; Erdos, G.; Meszaros, B.; Gao, J.; Wang, K.; Hu, G.; Wu, Z.; Sharma, A.; Hanson, J.; Paliwal, K.; Callebaut, I.; Bitard-Feildel, T.; Orlando, G.; Peng, Z.; Xu, J.; Wang, S.; Jones, D. T.; Cozzetto, D.; Meng, F.; Yan, J.; Gsponer, J.; Cheng, J.; Wu, T.; Kurgan, L.; Promponas, V. J.; Tamana, S.; Marino-Buslje, C.; Martinez-Perez, E.; Chasapi, A.; Ouzounis, C.; Dunker, A. K.; Kajava, A. V.; Leclercq, J. Y.; Aykac-Fas, B.; Lambrughi, M.; Maiani, E.; Papaleo, E.; Chemes, L. B.; Alvarez, L.; Gonzalez-Foutel, N. S.; Iglesias, V.; Pujols, J.; Ventura, S.; Palopoli, N.; Benitez, G. I.; Parisi, G.; Bassot, C.; Elofsson, A.; Govindarajan, S.; Lamb, J.; Salvatore, M.; Hatos, A.; Monzon, A. M.; Bevilacqua, M.; Micetic, I.; Minervini, G.; Paladin, L.; Quaglia, F.; Leonardi, E.; Davey, N.; Horvath, T.; Kovacs, O. P.; Murvai, N.; Pancsa, R.; Schad, E.; Szabo, B.; Tantos, A.; Macedo-Ribeiro, S.; Manso, J. A.; Pereira, P. J. B.; Davidovic, R.; Veljkovic, N.; Hajdu-Soltesz, B.; Pajkos, M.; Szaniszlo, T.; Guharoy, M.; Lazar, T.; Macossay-Castillo, M.; Tompa, P.; Tosatto, S. C. E.
Critical assessment of protein intrinsic disorder prediction (CAID) - Results of round 2
2023 Del Conte, A.; Mehdiabadi, M.; Bouhraoua, A.; Monzon, A. M.; Tosatto, S. C. E.; Piovesan, D.
Databases for intrinsically disordered proteins
2022 Piovesan, Damiano; Monzon, Alexander Miguel; Quaglia, Federica; Tosatto, Silvio C. E.
DisProt 7.0: A major update of the database of disordered proteins
2017 Piovesan, Damiano; Tabaro, Francesco; Micetic, Ivan; Necci, Marco; Quaglia, Federica; Oldfield, Christopher J.; Aspromonte, Maria Cristina; Davey, Norman E.; Davidović, Radoslav; Dosztányi, Zsuzsanna; Elofsson, Arne; Gasparini, Alessandra; Hatos, András; Kajava, Andrey V.; Kalmar, Lajos; Leonardi, Emanuela; Lazar, Tamas; Macedo Ribeiro, Sandra; Macossay Castillo, Mauricio; Meszaros, Attila; Minervini, Giovanni; Murvai, Nikoletta; Pujols, Jordi; Roche, Daniel B.; Salladini, Edoardo; Schad, Eva; Schramm, Antoine; Szabo, Beata; Tantos, Agnes; Tonello, Fiorella; Tsirigos, Konstantinos D.; Veljković, Nevena; Ventura, Salvador; Vranken, Wim; Warholm, Per; Uversky, Vladimir N.; Dunker, A. Keith; Longhi, Sonia; Tompa, Peter; Tosatto, Silvio
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
2022 Quaglia, Federica; Mészáros, Bálint; Salladini, Edoardo; Hatos, András; Pancsa, Rita; Chemes, Lucía B; Pajkos, Mátyás; Lazar, Tamas; Peña-Díaz, Samuel; Santos, Jaime; Ács, Veronika; Farahi, Nazanin; Fichó, Erzsébet; Aspromonte, Maria Cristina; Bassot, Claudio; Chasapi, Anastasia; Davey, Norman E; Davidović, Radoslav; Dobson, Laszlo; Elofsson, Arne; Erdős, Gábor; Gaudet, Pascale; Giglio, Michelle; Glavina, Juliana; Iserte, Javier; Iglesias, Valentín; Kálmán, Zsófia; Lambrughi, Matteo; Leonardi, Emanuela; Longhi, Sonia; Macedo-Ribeiro, Sandra; Maiani, Emiliano; Marchetti, Julia; Marino-Buslje, Cristina; Mészáros, Attila; Monzon, Alexander Miguel; Minervini, Giovanni; Nadendla, Suvarna; Nilsson, Juliet F; Novotný, Marian; Ouzounis, Christos A; Palopoli, Nicolás; Papaleo, Elena; Pereira, Pedro José Barbosa; Pozzati, Gabriele; Promponas, Vasilis J; Pujols, Jordi; Rocha, Alma Carolina Sanchez; Salas, Martin; Sawicki, Luciana Rodriguez; Schad, Eva; Shenoy, Aditi; Szaniszló, Tamás; Tsirigos, Konstantinos D; Veljkovic, Nevena; Parisi, Gustavo; Ventura, Salvador; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano
DisProt: intrinsic protein disorder annotation in 2020
2019 Hatos, András; Hajdu-Soltész, Borbála; Monzon, Alexander M; Palopoli, Nicolas; Álvarez, Lucía; Aykac-Fas, Burcu; Bassot, Claudio; Benítez, Guillermo I; Bevilacqua, Martina; Chasapi, Anastasia; Chemes, Lucia; Davey, Norman E; Davidović, Radoslav; Dunker, A Keith; Elofsson, Arne; Gobeill, Julien; Foutel, Nicolás S González; Sudha, Govindarajan; Guharoy, Mainak; Horvath, Tamas; Iglesias, Valentin; Kajava, Andrey V; Kovacs, Orsolya P; Lamb, John; Lambrughi, Matteo; Lazar, Tamas; Leclercq, Jeremy Y; Leonardi, Emanuela; Macedo-Ribeiro, Sandra; Macossay-Castillo, Mauricio; Maiani, Emiliano; Manso, José A; Marino-Buslje, Cristina; Martínez-Pérez, Elizabeth; Mészáros, Bálint; Mičetić, Ivan; Minervini, Giovanni; Murvai, Nikoletta; Necci, Marco; Ouzounis, Christos A; Pajkos, Mátyás; Paladin, Lisanna; Pancsa, Rita; Papaleo, Elena; Parisi, Gustavo; Pasche, Emilie; Barbosa Pereira, Pedro J; Promponas, Vasilis J; Pujols, Jordi; Quaglia, Federica; Ruch, Patrick; Salvatore, Marco; Schad, Eva; Szabo, Beata; Szaniszló, Tamás; Tamana, Stella; Tantos, Agnes; Veljkovic, Nevena; Ventura, Salvador; Vranken, Wim; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano
DOME: recommendations for supervised machine learning validation in biology
2021 Walsh, I.; Fishman, D.; Garcia-Gasulla, D.; Titma, T.; Pollastri, G.; Capriotti, E.; Casadio, R.; Capella-Gutierrez, S.; Cirillo, D.; Del Conte, A.; Dimopoulos, A. C.; Del Angel, V. D.; Dopazo, J.; Fariselli, P.; Fernandez, J. M.; Huber, F.; Kreshuk, A.; Lenaerts, T.; Martelli, P. L.; Navarro, A.; Broin, P. O.; Pinero, J.; Piovesan, D.; Reczko, M.; Ronzano, F.; Satagopam, V.; Savojardo, C.; Spiwok, V.; Tangaro, M. A.; Tartari, G.; Salgado, D.; Valencia, A.; Zambelli, F.; Harrow, J.; Psomopoulos, F. E.; Tosatto, S. C. E.
Editorial: Fuzzy Interactions: Many Facets of Protein Binding
2022 Piovesan, Damiano; Arbesú, Miguel; Fuxreiter, Monika; Pons, Miquel
Experimentally determined long intrinsically disordered protein regions are now abundant in the protein data bank
2020 Monzon, A. M.; Necci, M.; Quaglia, F.; Walsh, I.; Zanotti, G.; Piovesan, D.; Tosatto, S. C. E.