PIOVESAN, DAMIANO
PIOVESAN, DAMIANO
Dipartimento di Scienze Biomediche - DSB
CAGI6 ID panel challenge: assessment of phenotype and variant predictions in 415 children with neurodevelopmental disorders (NDDs)
2025 Aspromonte, Maria Cristina; Del Conte, Alessio; Zhu, Shaowen; Tan, Wuwei; Shen, Yang; Zhang, Yexian; Li, Qi; Wang, Maggie Haitian; Babbi, Giulia; Bovo, Samuele; Martelli, Pier Luigi; Casadio, Rita; Althagafi, Azza; Toonsi, Sumyyah; Kulmanov, Maxat; Hoehndorf, Robert; Katsonis, Panagiotis; Williams, Amanda; Lichtarge, Olivier; Xian, Su; Surento, Wesley; Pejaver, Vikas; Mooney, Sean D.; Sunderam, Uma; Srinivasan, Rajgopal; Murgia, Alessandra; Piovesan, Damiano; Tosatto, Silvio C. E.; Leonardi, Emanuela
Genetic variants and phenotypic data curated for the CAGI6 intellectual disability panel challenge
2025 Aspromonte, Maria Cristina; Del Conte, Alessio; Polli, Roberta; Baldo, Demetrio; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Boni, Stefania; Ciaccio, Claudia; D'Arrigo, Stefano; Donati, Ilaria; Granocchio, Elisa; Mammi, Isabella; Milani, Donatella; Negrin, Susanna; Nosadini, Margherita; Soli, Fiorenza; Stanzial, Franco; Turolla, Licia; Piovesan, Damiano; Tosatto, Silvio C E; Murgia, Alessandra; Leonardi, Emanuela
InterPro: The protein sequence classification resource in 2025
2025 Blum, M.; Andreeva, A.; Florentino, L. C.; Chuguransky, S. R.; Grego, T.; Hobbs, E.; Pinto, B. L.; Orr, A.; Paysan-Lafosse, T.; Ponamareva, I.; Salazar, G. A.; Bordin, N.; Bork, P.; Bridge, A.; Colwell, L.; Gough, J.; Haft, D. H.; Letunic, I.; Llinares-Lopez, F.; Marchler-Bauer, A.; Meng-Papaxanthos, L.; Mi, H.; Natale, D. A.; Orengo, C. A.; Pandurangan, A. P.; Piovesan, D.; Rivoire, C.; Sigrist, C. J. A.; Thanki, N.; Thibaud-Nissen, F.; Thomas, P. D.; Tosatto, S. C. E.; Wu, C. H.; Bateman, A.
Best practices for the manual curation of intrinsically disordered proteins in DisProt
2024 Quaglia, Federica; Chasapi, Anastasia; Nugnes, Maria Victoria; Aspromonte, Maria Cristina; Leonardi, Emanuela; Piovesan, Damiano; Tosatto, Silvio C E
CAFA-evaluator: a Python tool for benchmarking ontological classification methods
2024 Piovesan, Damiano; Zago, Davide; Joshi, Parnal; De Paolis Kaluza, M Clara; Mehdiabadi, Mahta; Ramola, Rashika; Monzon, Alexander Miguel; Reade, Walter; Friedberg, Iddo; Radivojac, Predrag; Tosatto, Silvio C E
DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology
2024 Attafi, Omar Abdelghani; Clementel, Damiano; Kyritsis, Konstantinos; Capriotti, Emidio; Farrell, Gavin; Fragkouli, Styliani-Christina; Castro, Leyla Jael; Hatos, András; Lenaerts, Tom; Mazurenko, Stanislav; Mozaffari, Soroush; Pradelli, Franco; Ruch, Patrick; Savojardo, Castrense; Turina, Paola; Zambelli, Federico; Piovesan, Damiano; Monzon, Alexander Miguel; Psomopoulos, Fotis; Tosatto, Silvio C E
MOBIDB in 2025: integrating ensemble properties and function annotations for intrinsically disordered proteins
2024 Piovesan, D.; Conte, A. D.; Mehdiabadi, M.; Aspromonte, M. C.; Blum, M.; Tesei, G.; von Bulow, S.; Lindorff-Larsen, K.; Tosatto, S. C. E.
RING 4.0: faster residue interaction networks with novel interaction types across over 35,000 different chemical structures
2024 Del , ; DEL CONTE, Alessio; Camagni, GIORGIA FRANCESCA; Clementel, Damiano; Minervini, Giovanni; Monzon, Alexander Miguel; Ferrari, Carlo; Piovesan, Damiano; Tosatto, Silvio
Searching and Using MobiDB Resource 6 to Explore Predictions and Annotations for Intrinsically Disordered Proteins
2024 Aspromonte, M. C.; Quaglia, F.; Monzon, A. M.; Clementel, D.; Del Conte, A.; Piovesan, D.; Tosatto, S. C. E.
STRPsearch: fast detection of structured tandem repeat proteins
2024 Mozaffari, S.; Arrias, P. N.; Clementel, D.; Piovesan, D.; Ferrari, C.; Tosatto, S. C. E.; Monzon, A. M.
A STRP-ed definition of Structured Tandem Repeats in Proteins
2023 Monzon, Alexander Miguel; Arrías, Paula Nazarena; Elofsson, Arne; Mier, Pablo; Andrade-Navarro, Miguel A; Bevilacqua, Martina; Clementel, Damiano; Bateman, Alex; Hirsh, Layla; Fornasari, Maria Silvina; Parisi, Gustavo; Piovesan, Damiano; Kajava, Andrey V; Tosatto, Silvio C E
CAGI6 ID-Challenge: Assessment of phenotype and variant predictions in 415 children with Neurodevelopmental Disorders (NDDs)
2023 Aspromonte, Maria Cristina; Conte, Alessio Del; Zhu, Shaowen; Tan, Wuwei; Shen, Yang; Zhang, Yexian; Li, Qi; Wang, Maggie Haitian; Babbi, Giulia; Bovo, Samuele; Martelli, Pier Luigi; Casadio, Rita; Althagafi, Azza; Toonsi, Sumyyah; Kulmanov, Maxat; Hoehndorf, Robert; Katsonis, Panagiotis; Williams, Amanda; Lichtarge, Olivier; Xian, Su; Surento, Wesley; Pejaver, Vikas; Mooney, Sean D.; Sunderam, Uma; Sriniva, Rajgopal; Murgia, Alessandra; Piovesan, Damiano; Tosatto, Silvio C. E.; Leonardi, Emanuela
CAID prediction portal: A comprehensive service for predicting intrinsic disorder and binding regions in proteins
2023 Del Conte, A.; Bouhraoua, A.; Mehdiabadi, M.; Clementel, D.; Monzon, A. M.; Tosatto, S. C. E.; Piovesan, D.
Critical assessment of protein intrinsic disorder prediction (CAID) - Results of round 2
2023 Del Conte, A.; Mehdiabadi, M.; Bouhraoua, A.; Monzon, A. M.; Tosatto, S. C. E.; Piovesan, D.
DisProt in 2024: improving function annotation of intrinsically disordered proteins
2023 Aspromonte, MARIA CRISTINA; Nugnes, MARIA VICTORIA; Quaglia, Federica; Bouhraoua, KAMEL EDDINE ADEL; Sagris, Vasileios; J Promponas, Vasilis; Chasapi, Anastasia; Fichó, Erzsébet; E Balatti, Galo; Parisi, Gustavo; González Buitrón, Martín; Erdos, Gabor; Pajkos, Matyas; Dosztányi, Zsuzsanna; Dobson, Laszlo; DEL CONTE, Alessio; Clementel, Damiano; Salladini, Edoardo; Leonardi, Emanuela; Kordevani, Fatemeh; Ghafouri, Hamidreza; G Tenorio Ku, Luiggi; Monzon, Alexander Miguel; Ferrari, Carlo; Kálmán, Zsófia; F Nilsson, Juliet; Santos, Jaime; Pintado-Grima, Carlos; Ventura, Salvador; Ács, Veronika; Pancsa, Rita; Goncalves Kulik, Mariane; A Andrade-Navarro, Miguel; José Barbosa Pereira, Pedro; Longhi, Sonia; Le Mercier, Philippe; Bergier, Julian; Tompa, Peter; Lazar, Tamas; Tosatto, Silvio; Piovesan, Damiano
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions
2023 Meszaros, B.; Hatos, A.; Palopoli, N.; Quaglia, F.; Salladini, E.; Van Roey, K.; Arthanari, H.; Dosztanyi, Z.; Felli, I. C.; Fischer, P. D.; Hoch, J. C.; Jeffries, C. M.; Longhi, S.; Maiani, E.; Orchard, S.; Pancsa, R.; Papaleo, E.; Pierattelli, R.; Piovesan, D.; Pritisanac, I.; Tenorio, L.; Viennet, T.; Tompa, P.; Vranken, W.; Tosatto, S. C. E.; Davey, N. E.
MobiDB: 10 years of intrinsically disordered proteins
2023 Piovesan, Damiano; Del Conte, Alessio; Clementel, Damiano; Monzon, Alexander Miguel; Bevilacqua, Martina; Aspromonte, Maria Cristina; Iserte, Javier A; Orti, Fernando E; Marino-Buslje, Cristina; Tosatto, Silvio C E
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics
2023 Del Conte, A.; Monzon, A. M.; Clementel, D.; Camagni, G. F.; Minervini, G.; Tosatto, S. C. E.; Piovesan, D.
The repetitive structure of DNA clamps: An overlooked protein tandem repeat
2023 Arrias, P. N.; Monzon, A. M.; Clementel, D.; Mozaffari, S.; Piovesan, D.; Kajava, A. V.; Tosatto, S. C. E.
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
2022 Varadi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan, Damiano; Salladini, Edoardo; Salzberg, Steven L; Sommer, Markus J; Steinegger, Martin; Suhajda, Erzsebet; Svergun, Dmitri; Tenorio-Ku, Luiggi; Tosatto, Silvio; Tunyasuvunakool, Kathryn; Waterhouse, Andrew Mark; Žídek, Augustin; Schwede, Torsten; Orengo, Christine; Velankar, Sameer